slisemap.plot
Utility functions for plotting.
legend_inside_facet(grid)
Move the legend to within the facet grid if possible.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
grid |
FacetGrid
|
Facet grid |
required |
Source code in slisemap/plot.py
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plot_embedding(Z, dimensions=('SLISEMAP 1', 'SLISEMAP 2'), title='Embedding', jitter=0.0, clusters=None, color=None, color_name='', color_norm=None, **kwargs)
Plot an embedding in a scatterplot.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
Z |
ndarray
|
The embedding. |
required |
dimensions |
Sequence[str]
|
Dimension names. Defaults to ("SLISEMAP 1", "SLISEMAP 2"). |
('SLISEMAP 1', 'SLISEMAP 2')
|
title |
str
|
Plot title. Defaults to "Embedding". |
'Embedding'
|
jitter |
Union[float, ndarray]
|
Jitter amount. Defaults to 0.0. |
0.0
|
clusters |
Optional[Sequence[int]]
|
Cluster labels. Defaults to None. |
None
|
color |
Optional[Sequence[float]]
|
Variable for coloring. Defaults to None. |
None
|
color_name |
str
|
Variable name. Defaults to "". |
''
|
color_norm |
Optional[Tuple[float]]
|
Color scale limits. Defaults to None. |
None
|
Other Parameters:
Name | Type | Description |
---|---|---|
**kwargs |
Any
|
Additional arguments to |
Returns:
Type | Description |
---|---|
Axes
|
The plot. |
Source code in slisemap/plot.py
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plot_matrix(B, coefficients, title='Local models', palette='RdBu', xlabel='Data items sorted left to right', items=None, **kwargs)
Plot local models in a heatmap.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
B |
ndarray
|
Local model coefficients. |
required |
coefficients |
Sequence[str]
|
Coefficient names. |
required |
palette |
str
|
|
'RdBu'
|
title |
str
|
Title of the plot. Defaults to "Local models". |
'Local models'
|
xlabel |
str
|
Label for the x-axis. Defaults to "Data items sorted left to right". |
'Data items sorted left to right'
|
items |
Optional[Sequence[str]]
|
Ticklabels for the x-axis. Defaults to None. |
None
|
Other Parameters:
Name | Type | Description |
---|---|---|
**kwargs |
Any
|
Additional arguments to |
Returns:
Type | Description |
---|---|
Axes
|
The plot. |
Source code in slisemap/plot.py
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plot_barmodels(B, clusters, centers, coefficients, bars=True, palette='bright', xlabel='Coefficients', title='Cluster mean local model', **kwargs)
Plot local models in a barplot.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
B |
ndarray
|
Local model coefficients. |
required |
clusters |
ndarray
|
Cluster labels. |
required |
centers |
ndarray
|
Cluster centers. |
required |
coefficients |
Sequence[str]
|
Coefficient names. |
required |
bars |
Union[bool, int, Sequence[str]]
|
Number / list of variables to show (or a bool for all). Defaults to True. |
True
|
palette |
str
|
|
'bright'
|
xlabel |
Optional[str]
|
Label for the x-axis. Defaults to "Coefficients". |
'Coefficients'
|
title |
Optional[str]
|
Title of the plot. Defaults to "Cluster mean local model". |
'Cluster mean local model'
|
Other Parameters:
Name | Type | Description |
---|---|---|
**kwargs |
Any
|
Additional arguments to |
Returns:
Type | Description |
---|---|
Axes
|
The plot. |
Source code in slisemap/plot.py
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plot_embedding_facet(Z, dimensions, data, names, legend_title='Value', jitter=0.0, share_hue=True, equal_aspect=True, **kwargs)
Plot (multiple) embeddings.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
Z |
ndarray
|
Embeddings. |
required |
dimensions |
Sequence[str]
|
Dimension names. |
required |
data |
ndarray
|
Data matrix. |
required |
names |
Sequence[str]
|
Column names. |
required |
legend_title |
str
|
Legend title. Defaults to "Value". |
'Value'
|
jitter |
Union[float, ndarray]
|
jitter. Defaults to 0.0. |
0.0
|
share_hue |
bool
|
Share color legend between facets. |
True
|
equal_aspect |
bool
|
Set equal scale for the axes. Defaults to True. |
True
|
Other Parameters:
Name | Type | Description |
---|---|---|
**kwargs |
Any
|
Additional arguments to |
Returns:
Type | Description |
---|---|
FacetGrid
|
The plot. |
Source code in slisemap/plot.py
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plot_density_facet(data, names, clusters=None, **kwargs)
Plot density plots.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
data |
ndarray
|
Data matrix. |
required |
names |
Sequence[str]
|
Column names. |
required |
clusters |
Optional[ndarray]
|
Cluster labels. Defaults to None. |
None
|
Other Parameters:
Name | Type | Description |
---|---|---|
**kwargs |
Any
|
Additional arguments to |
Returns:
Type | Description |
---|---|
FacetGrid
|
The plot. |
Source code in slisemap/plot.py
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plot_prototypes(Zp, *axs)
Draw a grid of prototypes.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
Zp |
ndarray
|
Prototype coordinates. |
required |
*axs |
Axes
|
Axes to draw on. |
()
|
Source code in slisemap/plot.py
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plot_solution(Z, B, coefficients, dimensions, loss=None, clusters=None, centers=None, title='', bars=True, jitter=0.0, left_kwargs={}, right_kwargs={}, **kwargs)
Plot a Slisemap solution.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
Z |
ndarray
|
Embedding matrix. |
required |
B |
ndarray
|
Local model coefficients. |
required |
coefficients |
Sequence[str]
|
Coefficient names. |
required |
dimensions |
Sequence[str]
|
Embedding names. |
required |
loss |
Optional[ndarray]
|
Local loss vector. Defaults to None. |
None
|
clusters |
Optional[ndarray]
|
Cluster labels. Defaults to None. |
None
|
centers |
Optional[ndarray]
|
Cluster centroids. Defaults to None. |
None
|
title |
str
|
Plot title. Defaults to "". |
''
|
bars |
Union[bool, int, Sequence[str]]
|
Plot coefficients in a barplot instead of a heatmap. Defaults to True. |
True
|
jitter |
Union[float, ndarray]
|
Add noise to the embedding. Defaults to 0.0. |
0.0
|
left_kwargs |
Dict[str, object]
|
Keyword arguments to the left (embedding) plot. Defaults to {}. |
{}
|
right_kwargs |
Dict[str, object]
|
Keyword arguments to the right (matrix/bar) plot. Defaults to {}. |
{}
|
Other Parameters:
Name | Type | Description |
---|---|---|
**kwargs |
Any
|
Additional arguments to |
Returns:
Type | Description |
---|---|
Figure
|
Figure |
Source code in slisemap/plot.py
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plot_position(Z, L, Zs, dimensions, title='', jitter=0.0, legend_inside=True, marker_size=1.0, **kwargs)
Plot local losses for alternative locations for the selected item(s).
Parameters:
Name | Type | Description | Default |
---|---|---|---|
Z |
ndarray
|
Embedding matrix. |
required |
L |
ndarray
|
Loss matrix. |
required |
Zs |
Optional[ndarray]
|
Selected coordinates. |
required |
dimensions |
Sequence[str]
|
Embedding names. |
required |
title |
str
|
Plot title. Defaults to "". |
''
|
jitter |
Union[float, ndarray]
|
Add random noise to the embedding. Defaults to 0.0. |
0.0
|
legend_inside |
bool
|
Move the legend inside the grid (if there is an empty cell). Defaults to True. |
True
|
marker_size |
float
|
Multiply the point size with this value. Defaults to 1.0. |
1.0
|
Other Parameters:
Name | Type | Description |
---|---|---|
**kwargs |
Any
|
Additional arguments to |
Returns:
Type | Description |
---|---|
FacetGrid
|
FacetGrid |
Source code in slisemap/plot.py
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plot_dist(X, Y, Z, loss, variables, targets, dimensions, title='', clusters=None, scatter=False, jitter=0.0, legend_inside=True, **kwargs)
Plot the distribution of the variables, either as density plots (with clusters) or as scatterplots.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
X |
ndarray
|
Data matrix. |
required |
Y |
ndarray
|
Target matrix. |
required |
Z |
ndarray
|
Embedding matrix. |
required |
loss |
ndarray
|
Local loss vector. |
required |
variables |
Sequence[str]
|
Variable names. |
required |
targets |
Sequence[str]
|
Target names. |
required |
dimensions |
Sequence[str]
|
Embedding names. |
required |
title |
str
|
Plot title. Defaults to "". |
''
|
clusters |
Optional[ndarray]
|
Cluster labels. Defaults to None. |
None
|
scatter |
bool
|
Plot a scatterplot instead of a density plot. Defaults to False. |
False
|
jitter |
Union[float, ndarray]
|
Add noise to the embedding. Defaults to 0.0. |
0.0
|
legend_inside |
bool
|
Move the legend inside a facet, if possible.. Defaults to True. |
True
|
Other Parameters:
Name | Type | Description |
---|---|---|
**kwargs |
Any
|
Additional arguments to |
Returns:
Type | Description |
---|---|
FacetGrid
|
FacetGrid. |
Source code in slisemap/plot.py
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